Series Summary for DCD000429SR

Expanding the annotation of zebrafish microRNAs based on small RNA sequencing

Survey

10.1016/j.gene.2014.05.036

SRP039502

miRNA-seq for brain, heart, testis and ovary in adult. Overall design: 2 males were sampled for brain, heart, and testes to make six libraries, from two females, ovaries were sampled and two libraries

True

irene.stevens

July 20, 2018, 3:06 a.m.

July 20, 2018, 3:28 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background
DCD007253BS DCD000429SR tissue Postlethwait Lab, Institute of Neuroscience, University of Oregon AB
Applied Assay ID Biosample Replicate Assay
DCD002661AA DCD014029BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003048SQ DCD003097TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011046DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003054SQ DCD003087TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011045DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003060SQ DCD003086TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011044DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002659AA DCD014032BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003066SQ DCD003092TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011042DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003057SQ DCD003091TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011043DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003053SQ DCD003080TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011041DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007254BS DCD000429SR tissue Postlethwait Lab, Institute of Neuroscience, University of Oregon AB
Applied Assay ID Biosample Replicate Assay
DCD002665AA DCD014027BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003056SQ DCD003079TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011058DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003058SQ DCD003075TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011056DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003063SQ DCD003074TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011057DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002662AA DCD014028BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003067SQ DCD003096TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011055DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003044SQ DCD003095TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011054DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003061SQ DCD003094TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011053DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007255BS DCD000429SR tissue Postlethwait Lab, Institute of Neuroscience, University of Oregon AB
Applied Assay ID Biosample Replicate Assay
DCD002660AA DCD014033BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003052SQ DCD003090TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011049DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003059SQ DCD003089TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011048DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003050SQ DCD003088TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011047DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002663AA DCD014034BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003045SQ DCD003083TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011050DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003046SQ DCD003082TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011051DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003049SQ DCD003081TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011052DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007256BS DCD000429SR tissue Postlethwait Lab, Institute of Neuroscience, University of Oregon AB
Applied Assay ID Biosample Replicate Assay
DCD002666AA DCD014030BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003062SQ DCD003093TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011064DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003064SQ DCD003085TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011062DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003065SQ DCD003084TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011063DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002664AA DCD014031BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003047SQ DCD003078TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011061DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003051SQ DCD003077TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011060DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003055SQ DCD003076TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 06/05/2015
DCD011059DT: FASTQ