Expanding the annotation of zebrafish microRNAs based on small RNA sequencing
Survey
10.1016/j.gene.2014.05.036
SRP039502
miRNA-seq for brain, heart, testis and ovary in adult. Overall design: 2 males were sampled for brain, heart, and testes to make six libraries, from two females, ovaries were sampled and two libraries
True
irene.stevens
July 20, 2018, 3:06 a.m.
July 20, 2018, 3:28 a.m.
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD007253BS | DCD000429SR | tissue | Postlethwait Lab, Institute of Neuroscience, University of Oregon | AB | 90 Days-2 Years | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002661AA | DCD014029BR | miRNA-seq_Postlethwait_Lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003048SQ | DCD003097TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003054SQ | DCD003087TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003060SQ | DCD003086TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002659AA | DCD014032BR | miRNA-seq_Postlethwait_Lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003066SQ | DCD003092TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003057SQ | DCD003091TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003053SQ | DCD003080TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD007254BS | DCD000429SR | tissue | Postlethwait Lab, Institute of Neuroscience, University of Oregon | AB | 90 Days-2 Years | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002665AA | DCD014027BR | miRNA-seq_Postlethwait_Lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003056SQ | DCD003079TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003058SQ | DCD003075TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003063SQ | DCD003074TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002662AA | DCD014028BR | miRNA-seq_Postlethwait_Lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003067SQ | DCD003096TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003044SQ | DCD003095TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003061SQ | DCD003094TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD007255BS | DCD000429SR | tissue | Postlethwait Lab, Institute of Neuroscience, University of Oregon | AB | 90 Days-2 Years | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002660AA | DCD014033BR | miRNA-seq_Postlethwait_Lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003052SQ | DCD003090TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003059SQ | DCD003089TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003050SQ | DCD003088TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002663AA | DCD014034BR | miRNA-seq_Postlethwait_Lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003045SQ | DCD003083TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003046SQ | DCD003082TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003049SQ | DCD003081TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD007256BS | DCD000429SR | tissue | Postlethwait Lab, Institute of Neuroscience, University of Oregon | AB | 90 Days-2 Years | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002666AA | DCD014030BR | miRNA-seq_Postlethwait_Lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003062SQ | DCD003093TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003064SQ | DCD003085TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003065SQ | DCD003084TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002664AA | DCD014031BR | miRNA-seq_Postlethwait_Lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003047SQ | DCD003078TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003051SQ | DCD003077TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD003055SQ | DCD003076TR | Postlethwait Lab, Institute of Neuroscience, University of Oregon | Illumina | HiSeq 2500 | forward | 06/05/2015 |