CAGE data for developmental time course
Survey
10.1038/nature12974
SRA055273
a nucleotide-resolution map of transcription initiation events in the zebrafish genome, generated by CAGE across 12 stages from the unfertilized egg to organogenesis
True
dunjanik
July 27, 2016, 5:56 a.m.
Dec. 14, 2018, 8:08 a.m.
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006680BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | Prim-25 | 36 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001441AA | DCD012958BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001538SQ | DCD001461TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001440AA | DCD012961BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001516SQ | DCD001476TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006682BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | 14-19 somites | 17 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001442AA | DCD012959BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001513SQ | DCD001463TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006683BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | Prim-5 | 25 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001443AA | DCD012942BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001532SQ | DCD001486TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006684BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | Shield | 6 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001444AA | DCD012936BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001522SQ | DCD001472TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001447AA | DCD012955BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001537SQ | DCD001475TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006685BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | 14-19 somites | 17 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001445AA | DCD012943BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001519SQ | DCD001473TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006686BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | 30%-epiboly | 4.7 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001446AA | DCD012953BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001515SQ | DCD001487TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006689BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | Sphere | 4 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001448AA | DCD012938BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001521SQ | DCD001462TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001449AA | DCD012940BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001523SQ | DCD001482TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006691BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | High | 3.3 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001450AA | DCD012931BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001520SQ | DCD001466TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006692BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | Oblong | 3.7 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001451AA | DCD012937BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001534SQ | DCD001469TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006693BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | 64-cell | 2 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001452AA | DCD012945BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001531SQ | DCD001464TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006694BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | 512-cell | 2.75 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001453AA | DCD012933BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001536SQ | DCD001465TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD006695BS | DCD000242SR | tissue | Mueller lab, University of Birmingham | AB | 90 Days-2 Years | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001454AA | DCD012939BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
---|---|---|---|---|---|---|
DCD001514SQ | DCD001457TR | RIKEN, RIKEN | Illumina | GAIIx | unstranded | 11/01/2009 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD006696BS | DCD000242SR | whole organism | Mueller lab, University of Birmingham | AB | 1-cell | — | 0.2 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD001455AA | DCD012946BR | CAGE-seq_Mueller_lab_0006AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Paired End | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD001527SQ | DCD001459TR | RIKEN, RIKEN | Illumina | GAIIx | ✘ | unstranded | 11/01/2009 |