Series Summary for DCD000242SR

CAGE data for developmental time course

Survey

10.1038/nature12974

SRA055273

a nucleotide-resolution map of transcription initiation events in the zebrafish genome, generated by CAGE across 12 stages from the unfertilized egg to organogenesis

True

dunjanik

July 27, 2016, 5:56 a.m.

Dec. 14, 2018, 8:08 a.m.

Assays

Biosample ID Series biosample_type biosample_lab genetic_background
DCD006680BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001441AA DCD012958BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001538SQ DCD001461TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001182DT: FASTQ
DCD007605DT: LOG GRCz10/danRer10
DCD007608DT: BED GRCz10/danRer10
DCD007614DT: BAM GRCz10/danRer10
DCD007616DT: BED GRCz10/danRer10
DCD007646DT: HTML GRCz10/danRer10
DCD008895DT: BIGBED GRCz10/danRer10
DCD008897DT: BIGWIG GRCz10/danRer10
DCD011355DT: LOG GRCz11/danRer11
DCD011358DT: HTML GRCz11/danRer11
DCD011359DT: BED GRCz11/danRer11
DCD011360DT: BAM GRCz11/danRer11
DCD011361DT: BIGWIG GRCz11/danRer11
DCD011362DT: BIGBED GRCz11/danRer11
DCD011372DT: BED GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001440AA DCD012961BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001516SQ DCD001476TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001183DT: FASTQ
DCD007556DT: LOG GRCz10/danRer10
DCD007558DT: BED GRCz10/danRer10
DCD007561DT: BAM GRCz10/danRer10
DCD007567DT: BED GRCz10/danRer10
DCD007634DT: HTML GRCz10/danRer10
DCD008870DT: BIGBED GRCz10/danRer10
DCD008873DT: BIGWIG GRCz10/danRer10
DCD011264DT: LOG GRCz11/danRer11
DCD011265DT: HTML GRCz11/danRer11
DCD011267DT: BED GRCz11/danRer11
DCD011270DT: BIGBED GRCz11/danRer11
DCD011271DT: BIGWIG GRCz11/danRer11
DCD011272DT: BAM GRCz11/danRer11
DCD011273DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006682BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001442AA DCD012959BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001513SQ DCD001463TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001185DT: FASTQ
DCD007547DT: LOG GRCz10/danRer10
DCD007548DT: BED GRCz10/danRer10
DCD007553DT: BAM GRCz10/danRer10
DCD007555DT: BED GRCz10/danRer10
DCD007632DT: HTML GRCz10/danRer10
DCD008864DT: BIGBED GRCz10/danRer10
DCD008867DT: BIGWIG GRCz10/danRer10
DCD011188DT: HTML GRCz11/danRer11
DCD011189DT: LOG GRCz11/danRer11
DCD011190DT: BIGWIG GRCz11/danRer11
DCD011191DT: BED GRCz11/danRer11
DCD011192DT: BAM GRCz11/danRer11
DCD011193DT: BIGBED GRCz11/danRer11
DCD011194DT: BED GRCz11/danRer11
DCD011195DT: TSV GRCz11/danRer11
DCD011196DT: BED GRCz11/danRer11
DCD011197DT: BED GRCz11/danRer11
DCD011198DT: BED GRCz11/danRer11
DCD011199DT: BED GRCz11/danRer11
DCD011200DT: BED GRCz11/danRer11
DCD011201DT: BED GRCz11/danRer11
DCD011202DT: BED GRCz11/danRer11
DCD011203DT: BED GRCz11/danRer11
DCD011204DT: BED GRCz11/danRer11
DCD011205DT: BED GRCz11/danRer11
DCD011206DT: BED GRCz11/danRer11
DCD011207DT: LOG GRCz11/danRer11
DCD011208DT: BIGWIG GRCz11/danRer11
DCD011209DT: HTML GRCz11/danRer11
DCD011210DT: BED GRCz11/danRer11
DCD011211DT: BAM GRCz11/danRer11
DCD011212DT: BED GRCz11/danRer11
DCD011213DT: BIGBED GRCz11/danRer11
DCD011214DT: TSV GRCz11/danRer11
DCD011215DT: BED GRCz11/danRer11
DCD011216DT: BED GRCz11/danRer11
DCD011217DT: BED GRCz11/danRer11
DCD011218DT: BED GRCz11/danRer11
DCD011219DT: BED GRCz11/danRer11
DCD011220DT: BED GRCz11/danRer11
DCD011221DT: BED GRCz11/danRer11
DCD011222DT: BED GRCz11/danRer11
DCD011223DT: BED GRCz11/danRer11
DCD011224DT: BED GRCz11/danRer11
DCD011225DT: BED GRCz11/danRer11
DCD011226DT: LOG GRCz11/danRer11
DCD011227DT: HTML GRCz11/danRer11
DCD011228DT: BIGWIG GRCz11/danRer11
DCD011229DT: BED GRCz11/danRer11
DCD011230DT: BAM GRCz11/danRer11
DCD011231DT: BIGBED GRCz11/danRer11
DCD011232DT: BED GRCz11/danRer11
DCD011233DT: TSV GRCz11/danRer11
DCD011234DT: BED GRCz11/danRer11
DCD011235DT: BED GRCz11/danRer11
DCD011236DT: BED GRCz11/danRer11
DCD011237DT: BED GRCz11/danRer11
DCD011238DT: BED GRCz11/danRer11
DCD011239DT: BED GRCz11/danRer11
DCD011240DT: BED GRCz11/danRer11
DCD011241DT: BED GRCz11/danRer11
DCD011242DT: BED GRCz11/danRer11
DCD011243DT: BED GRCz11/danRer11
DCD011244DT: BED GRCz11/danRer11
DCD011245DT: BIGWIG GRCz11/danRer11
DCD011246DT: LOG GRCz11/danRer11
DCD011247DT: HTML GRCz11/danRer11
DCD011248DT: BED GRCz11/danRer11
DCD011249DT: BAM GRCz11/danRer11
DCD011252DT: BIGBED GRCz11/danRer11
DCD011258DT: BED GRCz11/danRer11
DCD011368DT: TSV GRCz11/danRer11
DCD011369DT: BED GRCz11/danRer11
DCD011371DT: BED GRCz11/danRer11
DCD011373DT: BED GRCz11/danRer11
DCD011374DT: BED GRCz11/danRer11
DCD011375DT: BED GRCz11/danRer11
DCD011376DT: BED GRCz11/danRer11
DCD011377DT: BED GRCz11/danRer11
DCD011378DT: BED GRCz11/danRer11
DCD011379DT: BED GRCz11/danRer11
DCD011380DT: BED GRCz11/danRer11
DCD011381DT: BED GRCz11/danRer11
DCD018061DT: LOG GRCz11/danRer11
DCD018062DT: HTML GRCz11/danRer11
DCD018063DT: BIGWIG GRCz11/danRer11
DCD018064DT: BED GRCz11/danRer11
DCD018065DT: BAM GRCz11/danRer11
DCD018066DT: BED GRCz11/danRer11
DCD018067DT: BIGBED GRCz11/danRer11
DCD018068DT: BED GRCz11/danRer11
DCD018069DT: TSV GRCz11/danRer11
DCD018070DT: BED GRCz11/danRer11
DCD018071DT: BED GRCz11/danRer11
DCD018072DT: BED GRCz11/danRer11
DCD018073DT: BED GRCz11/danRer11
DCD018074DT: BED GRCz11/danRer11
DCD018075DT: BED GRCz11/danRer11
DCD018076DT: BED GRCz11/danRer11
DCD018077DT: BED GRCz11/danRer11
DCD018078DT: BED GRCz11/danRer11
DCD018079DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006683BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001443AA DCD012942BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001532SQ DCD001486TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001184DT: FASTQ
DCD007589DT: LOG GRCz10/danRer10
DCD007592DT: BED GRCz10/danRer10
DCD007599DT: BAM GRCz10/danRer10
DCD007611DT: BED GRCz10/danRer10
DCD007643DT: HTML GRCz10/danRer10
DCD008887DT: BIGBED GRCz10/danRer10
DCD008888DT: BIGWIG GRCz10/danRer10
DCD011324DT: LOG GRCz11/danRer11
DCD011329DT: HTML GRCz11/danRer11
DCD011330DT: BIGWIG GRCz11/danRer11
DCD011332DT: BED GRCz11/danRer11
DCD011333DT: BIGBED GRCz11/danRer11
DCD011336DT: BAM GRCz11/danRer11
DCD011341DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006684BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001444AA DCD012936BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001522SQ DCD001472TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001187DT: FASTQ
DCD007569DT: LOG GRCz10/danRer10
DCD007574DT: BED GRCz10/danRer10
DCD007577DT: BAM GRCz10/danRer10
DCD007583DT: BED GRCz10/danRer10
DCD007638DT: HTML GRCz10/danRer10
DCD008877DT: BIGBED GRCz10/danRer10
DCD008878DT: BIGWIG GRCz10/danRer10
DCD011292DT: LOG GRCz11/danRer11
DCD011294DT: HTML GRCz11/danRer11
DCD011296DT: BED GRCz11/danRer11
DCD011297DT: BED GRCz11/danRer11
DCD011300DT: BIGBED GRCz11/danRer11
DCD011301DT: BIGWIG GRCz11/danRer11
DCD011302DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001447AA DCD012955BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001537SQ DCD001475TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001188DT: FASTQ
DCD007601DT: LOG GRCz10/danRer10
DCD007603DT: BED GRCz10/danRer10
DCD007607DT: BAM GRCz10/danRer10
DCD007609DT: BED GRCz10/danRer10
DCD007645DT: HTML GRCz10/danRer10
DCD008890DT: BIGBED GRCz10/danRer10
DCD008892DT: BIGWIG GRCz10/danRer10
DCD011349DT: LOG GRCz11/danRer11
DCD011350DT: HTML GRCz11/danRer11
DCD011351DT: BED GRCz11/danRer11
DCD011352DT: BIGBED GRCz11/danRer11
DCD011353DT: BIGWIG GRCz11/danRer11
DCD011356DT: BAM GRCz11/danRer11
DCD011357DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006685BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001445AA DCD012943BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001519SQ DCD001473TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001186DT: FASTQ
DCD007557DT: LOG GRCz10/danRer10
DCD007559DT: BED GRCz10/danRer10
DCD007564DT: BAM GRCz10/danRer10
DCD007566DT: BED GRCz10/danRer10
DCD007635DT: HTML GRCz10/danRer10
DCD008869DT: BIGBED GRCz10/danRer10
DCD008872DT: BIGWIG GRCz10/danRer10
DCD011269DT: LOG GRCz11/danRer11
DCD011274DT: HTML GRCz11/danRer11
DCD011275DT: BED GRCz11/danRer11
DCD011276DT: BAM GRCz11/danRer11
DCD011277DT: BIGWIG GRCz11/danRer11
DCD011278DT: BIGBED GRCz11/danRer11
DCD011280DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006686BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001446AA DCD012953BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001515SQ DCD001487TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001189DT: FASTQ
DCD007550DT: LOG GRCz10/danRer10
DCD007552DT: BED GRCz10/danRer10
DCD007560DT: BAM GRCz10/danRer10
DCD007571DT: BED GRCz10/danRer10
DCD007633DT: HTML GRCz10/danRer10
DCD008863DT: BIGBED GRCz10/danRer10
DCD008866DT: BIGWIG GRCz10/danRer10
DCD011254DT: LOG GRCz11/danRer11
DCD011260DT: HTML GRCz11/danRer11
DCD011261DT: BIGWIG GRCz11/danRer11
DCD011262DT: BED GRCz11/danRer11
DCD011263DT: BAM GRCz11/danRer11
DCD011266DT: BIGBED GRCz11/danRer11
DCD011268DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006689BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001448AA DCD012938BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001521SQ DCD001462TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001191DT: FASTQ
DCD007565DT: LOG GRCz10/danRer10
DCD007568DT: BED GRCz10/danRer10
DCD007572DT: BAM GRCz10/danRer10
DCD007575DT: BED GRCz10/danRer10
DCD007637DT: HTML GRCz10/danRer10
DCD008875DT: BIGBED GRCz10/danRer10
DCD008880DT: BIGWIG GRCz10/danRer10
DCD011287DT: LOG GRCz11/danRer11
DCD011288DT: HTML GRCz11/danRer11
DCD011289DT: BED GRCz11/danRer11
DCD011290DT: BAM GRCz11/danRer11
DCD011291DT: BED GRCz11/danRer11
DCD011293DT: BIGBED GRCz11/danRer11
DCD011295DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001449AA DCD012940BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001523SQ DCD001482TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001190DT: FASTQ
DCD007573DT: LOG GRCz10/danRer10
DCD007579DT: BED GRCz10/danRer10
DCD007581DT: BAM GRCz10/danRer10
DCD007586DT: BED GRCz10/danRer10
DCD007639DT: HTML GRCz10/danRer10
DCD008876DT: BIGBED GRCz10/danRer10
DCD008879DT: BIGWIG GRCz10/danRer10
DCD011298DT: LOG GRCz11/danRer11
DCD011299DT: HTML GRCz11/danRer11
DCD011303DT: BED GRCz11/danRer11
DCD011305DT: BIGBED GRCz11/danRer11
DCD011306DT: BIGWIG GRCz11/danRer11
DCD011307DT: BAM GRCz11/danRer11
DCD011308DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006691BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001450AA DCD012931BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001520SQ DCD001466TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001193DT: FASTQ
DCD007562DT: LOG GRCz10/danRer10
DCD007563DT: BED GRCz10/danRer10
DCD007570DT: BAM GRCz10/danRer10
DCD007576DT: BED GRCz10/danRer10
DCD007636DT: HTML GRCz10/danRer10
DCD008871DT: BIGBED GRCz10/danRer10
DCD008874DT: BIGWIG GRCz10/danRer10
DCD011279DT: LOG GRCz11/danRer11
DCD011281DT: HTML GRCz11/danRer11
DCD011282DT: BIGBED GRCz11/danRer11
DCD011283DT: BIGWIG GRCz11/danRer11
DCD011284DT: BED GRCz11/danRer11
DCD011285DT: BAM GRCz11/danRer11
DCD011286DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006692BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001451AA DCD012937BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001534SQ DCD001469TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001192DT: FASTQ
DCD007594DT: LOG GRCz10/danRer10
DCD007595DT: BED GRCz10/danRer10
DCD007598DT: BAM GRCz10/danRer10
DCD007602DT: BED GRCz10/danRer10
DCD007644DT: HTML GRCz10/danRer10
DCD008891DT: BIGBED GRCz10/danRer10
DCD008894DT: BIGWIG GRCz10/danRer10
DCD011334DT: LOG GRCz11/danRer11
DCD011335DT: HTML GRCz11/danRer11
DCD011337DT: BED GRCz11/danRer11
DCD011338DT: BIGBED GRCz11/danRer11
DCD011339DT: BIGWIG GRCz11/danRer11
DCD011342DT: BAM GRCz11/danRer11
DCD011343DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006693BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001452AA DCD012945BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001531SQ DCD001464TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001195DT: FASTQ
DCD007585DT: LOG GRCz10/danRer10
DCD007588DT: BED GRCz10/danRer10
DCD007593DT: BAM GRCz10/danRer10
DCD007596DT: BED GRCz10/danRer10
DCD007642DT: HTML GRCz10/danRer10
DCD008881DT: BIGBED GRCz10/danRer10
DCD008885DT: BIGWIG GRCz10/danRer10
DCD011320DT: LOG GRCz11/danRer11
DCD011321DT: HTML GRCz11/danRer11
DCD011323DT: BED GRCz11/danRer11
DCD011325DT: BIGBED GRCz11/danRer11
DCD011326DT: BIGWIG GRCz11/danRer11
DCD011327DT: BAM GRCz11/danRer11
DCD011328DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006694BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001453AA DCD012933BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001536SQ DCD001465TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001194DT: FASTQ
DCD007597DT: LOG GRCz10/danRer10
DCD007600DT: BED GRCz10/danRer10
DCD007606DT: BAM GRCz10/danRer10
DCD007612DT: BED GRCz10/danRer10
DCD007648DT: HTML GRCz10/danRer10
DCD008889DT: BIGBED GRCz10/danRer10
DCD008893DT: BIGWIG GRCz10/danRer10
DCD011340DT: LOG GRCz11/danRer11
DCD011344DT: HTML GRCz11/danRer11
DCD011345DT: BIGWIG GRCz11/danRer11
DCD011346DT: BED GRCz11/danRer11
DCD011347DT: BAM GRCz11/danRer11
DCD011348DT: BIGBED GRCz11/danRer11
DCD011354DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006695BS DCD000242SR tissue Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001454AA DCD012939BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001514SQ DCD001457TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001197DT: FASTQ
DCD007546DT: LOG GRCz10/danRer10
DCD007549DT: BED GRCz10/danRer10
DCD007551DT: BAM GRCz10/danRer10
DCD007554DT: BED GRCz10/danRer10
DCD007631DT: HTML GRCz10/danRer10
DCD008865DT: BIGBED GRCz10/danRer10
DCD008868DT: BIGWIG GRCz10/danRer10
DCD011250DT: LOG GRCz11/danRer11
DCD011251DT: HTML GRCz11/danRer11
DCD011253DT: BED GRCz11/danRer11
DCD011255DT: BIGBED GRCz11/danRer11
DCD011256DT: BIGWIG GRCz11/danRer11
DCD011257DT: BAM GRCz11/danRer11
DCD011259DT: BED GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006696BS DCD000242SR whole organism Mueller lab, University of Birmingham AB
Applied Assay ID Biosample Replicate Assay
DCD001455AA DCD012946BR CAGE-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001527SQ DCD001459TR RIKEN, RIKEN Illumina GAIIx 11/01/2009
DCD001196DT: FASTQ
DCD007578DT: LOG GRCz10/danRer10
DCD007580DT: BED GRCz10/danRer10
DCD007587DT: BAM GRCz10/danRer10
DCD007590DT: BED GRCz10/danRer10
DCD007640DT: HTML GRCz10/danRer10
DCD008882DT: BIGBED GRCz10/danRer10
DCD008884DT: BIGWIG GRCz10/danRer10
DCD011304DT: LOG GRCz11/danRer11
DCD011309DT: HTML GRCz11/danRer11
DCD011310DT: BIGWIG GRCz11/danRer11
DCD011311DT: BED GRCz11/danRer11
DCD011312DT: BAM GRCz11/danRer11
DCD011313DT: BIGBED GRCz11/danRer11
DCD011316DT: BED GRCz11/danRer11