Series Summary for DCD000332SR

Eomesodermin and Smad2 targets at high-sphere with ChIP-seq

Survey

10.1186/s12915-014-0081-5

GSE51894

Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression

True

mickael.dong

May 19, 2017, 6:57 a.m.

Nov. 7, 2018, 6:37 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By anatomical_term Treatment Hours Post Fertilization Mutation Description
DCD006921BS DCD000332SR whole organism Wardle Lab, King's College London AB Sphere — — 4 —
Applied Assay ID Biosample Replicate Assay
DCD001914AA DCD013425BR ChIP-seq_Wardle_Lab_input1_control_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002258SQ DCD002265TR Wardle Lab, King's College London Illumina GAIIx 02/01/2012
DCD004729DT: FASTQ
DCD016978DT: BAM GRCz10/danRer10
DCD017019DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001913AA DCD013426BR ChIP-seq_Wardle_Lab_input1_control_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002260SQ DCD002267TR Wardle Lab, King's College London Illumina GAIIx 02/01/2012
DCD004731DT: FASTQ
DCD016993DT: BAM GRCz10/danRer10
DCD017031DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001912AA DCD013427BR ChIP-seq_Wardle_Lab_Eomesa_0001AS DCD001914AA
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003100SQ DCD003130TR Wardle Lab, King's College London Illumina GAIIx 01/02/2012
DCD011123DT: FASTQ
DCD016543DT: BED GRCz11/danRer11
DCD016544DT: BAM GRCz11/danRer11
DCD016932DT: BED GRCz10/danRer10
DCD016934DT: BAM GRCz10/danRer10
DCD017399DT: BED GRCz10/danRer10
DCD017402DT: BAM GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003099SQ DCD003129TR Wardle Lab, King's College London Illumina GAIIx 01/02/2012
DCD011122DT: FASTQ
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001911AA DCD013428BR ChIP-seq_Wardle_Lab_Smad2_0001AS DCD001914AA
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002262SQ DCD002269TR Wardle Lab, King's College London Illumina GAIIx 02/01/2012
DCD004733DT: FASTQ
DCD008994DT: BIGNARROWPEAK GRCz10/danRer10
DCD009107DT: BIGWIG GRCz10/danRer10
DCD016586DT: BAM GRCz11/danRer11
DCD016587DT: BED GRCz11/danRer11
DCD016740DT: BED GRCz10/danRer10
DCD016741DT: BAM GRCz10/danRer10
DCD017154DT: BED GRCz10/danRer10
DCD017155DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001909AA DCD013429BR ChIP-seq_Wardle_Lab_Eomesa_0001AS DCD001913AA
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002265SQ DCD002272TR Wardle Lab, King's College London Illumina GAIIx 02/01/2012
DCD004736DT: FASTQ
DCD008991DT: BIGNARROWPEAK GRCz10/danRer10
DCD009106DT: BIGWIG GRCz10/danRer10
DCD016546DT: BED GRCz11/danRer11
DCD016547DT: BAM GRCz11/danRer11
DCD016935DT: BAM GRCz10/danRer10
DCD016936DT: BED GRCz10/danRer10
DCD017400DT: BAM GRCz10/danRer10
DCD017403DT: BED GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001907AA DCD013430BR ChIP-seq_Wardle_Lab_Smad2_0001AS DCD001913AA
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD002264SQ DCD002271TR Wardle Lab, King's College London Illumina GAIIx — ✘ — — 02/01/2012
DCD004735DT: FASTQ
DCD008992DT: BIGNARROWPEAK GRCz10/danRer10
DCD009110DT: BIGWIG GRCz10/danRer10
DCD016588DT: BED GRCz11/danRer11
DCD016590DT: BAM GRCz11/danRer11
DCD016738DT: BED GRCz10/danRer10
DCD016739DT: BAM GRCz10/danRer10
DCD017152DT: BED GRCz10/danRer10
DCD017153DT: BAM GRCz10/danRer10