Series Summary for DCD000384SR

RNA-seq of 6 different tissues: Annotation of the Zebrafish Genome through an Integrated Transcriptomic and Proteomic Analysis

Survey

10.1074/mcp.M114.038299

SRX204106

RNA-seq data from 6 different adult tissues were obtained: eye, intestine/pancreas, liver, muscle, spleen and testis. 69,206 high-confidence transcripts were identified, including novel transcripts for 22,585 genes and 9,404 novel transcribed loci.

True

mickael.dong

Jan. 9, 2018, 2:06 a.m.

Oct. 22, 2018, 4:18 a.m.

Assays

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007048BS DCD000384SR tissue Pandey Lab, Johns Hopkins University School of Medicine SAT 90 Days-2 Years adult
Applied Assay ID Biosample Replicate Assay
DCD002046AA DCD013637BR RNA-seq_Pandey_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002416SQ DCD002428TR Pandey Lab, Johns Hopkins University School of Medicine Illumina HiScanSQ 07/22/2015
DCD007972DT: FASTQ
DCD008762DT: BIGWIG GRCz10/danRer10
DCD010224DT: LOG GRCz10/danRer10
DCD010225DT: TSV GRCz10/danRer10
DCD010226DT: TSV GRCz10/danRer10
DCD010228DT: BEDGRAPH GRCz10/danRer10
DCD010230DT: BEDGRAPH GRCz10/danRer10
DCD010231DT: PDF GRCz10/danRer10
DCD010232DT: LOG GRCz10/danRer10
DCD010233DT: PDF GRCz10/danRer10
DCD010234DT: LOG GRCz10/danRer10
DCD010235DT: BEDGRAPH GRCz10/danRer10
DCD010239DT: BEDGRAPH GRCz10/danRer10
DCD010288DT: BAM GRCz10/danRer10
DCD012934DT: LOG GRCz11/danRer11
DCD012935DT: TSV GRCz11/danRer11
DCD012936DT: TSV GRCz11/danRer11
DCD012939DT: BIGWIG GRCz11/danRer11
DCD012940DT: PDF GRCz11/danRer11
DCD012941DT: LOG GRCz11/danRer11
DCD012942DT: PDF GRCz11/danRer11
DCD012943DT: LOG GRCz11/danRer11
DCD012944DT: BEDGRAPH GRCz11/danRer11
DCD012949DT: BEDGRAPH GRCz11/danRer11
DCD012971DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007049BS DCD000384SR tissue Pandey Lab, Johns Hopkins University School of Medicine SAT 90 Days-2 Years adult
Applied Assay ID Biosample Replicate Assay
DCD002047AA DCD013638BR RNA-seq_Pandey_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002417SQ DCD002429TR Pandey Lab, Johns Hopkins University School of Medicine Illumina HiScanSQ 07/22/2015
DCD007973DT: FASTQ
DCD008774DT: BIGWIG GRCz10/danRer10
DCD010199DT: LOG GRCz10/danRer10
DCD010200DT: TSV GRCz10/danRer10
DCD010201DT: TSV GRCz10/danRer10
DCD010202DT: BEDGRAPH GRCz10/danRer10
DCD010204DT: BEDGRAPH GRCz10/danRer10
DCD010205DT: BEDGRAPH GRCz10/danRer10
DCD010206DT: PDF GRCz10/danRer10
DCD010207DT: LOG GRCz10/danRer10
DCD010208DT: PDF GRCz10/danRer10
DCD010209DT: LOG GRCz10/danRer10
DCD010210DT: BEDGRAPH GRCz10/danRer10
DCD010229DT: BAM GRCz10/danRer10
DCD012945DT: LOG GRCz11/danRer11
DCD012946DT: TSV GRCz11/danRer11
DCD012947DT: TSV GRCz11/danRer11
DCD012950DT: BIGWIG GRCz11/danRer11
DCD012951DT: PDF GRCz11/danRer11
DCD012952DT: LOG GRCz11/danRer11
DCD012953DT: PDF GRCz11/danRer11
DCD012954DT: LOG GRCz11/danRer11
DCD012955DT: BEDGRAPH GRCz11/danRer11
DCD012959DT: BEDGRAPH GRCz11/danRer11
DCD012992DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007050BS DCD000384SR tissue Pandey Lab, Johns Hopkins University School of Medicine SAT 90 Days-2 Years adult
Applied Assay ID Biosample Replicate Assay
DCD002048AA DCD013639BR RNA-seq_Pandey_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002418SQ DCD002430TR Pandey Lab, Johns Hopkins University School of Medicine Illumina HiScanSQ 07/22/2015
DCD007974DT: FASTQ
DCD008849DT: BIGWIG GRCz10/danRer10
DCD009348DT: LOG GRCz10/danRer10
DCD009350DT: TSV GRCz10/danRer10
DCD009352DT: TSV GRCz10/danRer10
DCD009353DT: BEDGRAPH GRCz10/danRer10
DCD009354DT: BEDGRAPH GRCz10/danRer10
DCD009355DT: BEDGRAPH GRCz10/danRer10
DCD009356DT: BEDGRAPH GRCz10/danRer10
DCD009357DT: LOG GRCz10/danRer10
DCD009358DT: PDF GRCz10/danRer10
DCD009359DT: LOG GRCz10/danRer10
DCD009361DT: PDF GRCz10/danRer10
DCD009387DT: BAM GRCz10/danRer10
DCD012956DT: LOG GRCz11/danRer11
DCD012957DT: TSV GRCz11/danRer11
DCD012958DT: TSV GRCz11/danRer11
DCD012960DT: BEDGRAPH GRCz11/danRer11
DCD012961DT: BIGWIG GRCz11/danRer11
DCD012962DT: PDF GRCz11/danRer11
DCD012963DT: LOG GRCz11/danRer11
DCD012964DT: PDF GRCz11/danRer11
DCD012965DT: LOG GRCz11/danRer11
DCD012966DT: BEDGRAPH GRCz11/danRer11
DCD013010DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007051BS DCD000384SR tissue Pandey Lab, Johns Hopkins University School of Medicine SAT 90 Days-2 Years adult
Applied Assay ID Biosample Replicate Assay
DCD002049AA DCD013640BR RNA-seq_Pandey_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002419SQ DCD002431TR Pandey Lab, Johns Hopkins University School of Medicine Illumina HiScanSQ 07/22/2015
DCD007975DT: FASTQ
DCD008786DT: BIGWIG GRCz10/danRer10
DCD010082DT: LOG GRCz10/danRer10
DCD010083DT: TSV GRCz10/danRer10
DCD010084DT: TSV GRCz10/danRer10
DCD010085DT: BEDGRAPH GRCz10/danRer10
DCD010087DT: BEDGRAPH GRCz10/danRer10
DCD010088DT: PDF GRCz10/danRer10
DCD010089DT: LOG GRCz10/danRer10
DCD010090DT: PDF GRCz10/danRer10
DCD010091DT: LOG GRCz10/danRer10
DCD010092DT: BEDGRAPH GRCz10/danRer10
DCD010093DT: BEDGRAPH GRCz10/danRer10
DCD010155DT: BAM GRCz10/danRer10
DCD012967DT: LOG GRCz11/danRer11
DCD012968DT: TSV GRCz11/danRer11
DCD012969DT: TSV GRCz11/danRer11
DCD012972DT: BIGWIG GRCz11/danRer11
DCD012973DT: PDF GRCz11/danRer11
DCD012974DT: LOG GRCz11/danRer11
DCD012975DT: PDF GRCz11/danRer11
DCD012976DT: LOG GRCz11/danRer11
DCD012977DT: BEDGRAPH GRCz11/danRer11
DCD012981DT: BEDGRAPH GRCz11/danRer11
DCD013014DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007052BS DCD000384SR tissue Pandey Lab, Johns Hopkins University School of Medicine SAT 90 Days-2 Years adult
Applied Assay ID Biosample Replicate Assay
DCD002050AA DCD013641BR RNA-seq_Pandey_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002420SQ DCD002432TR Pandey Lab, Johns Hopkins University School of Medicine Illumina HiScanSQ 07/22/2015
DCD007976DT: FASTQ
DCD008777DT: BIGWIG GRCz10/danRer10
DCD010152DT: LOG GRCz10/danRer10
DCD010153DT: TSV GRCz10/danRer10
DCD010154DT: TSV GRCz10/danRer10
DCD010156DT: BEDGRAPH GRCz10/danRer10
DCD010157DT: BEDGRAPH GRCz10/danRer10
DCD010158DT: BEDGRAPH GRCz10/danRer10
DCD010159DT: PDF GRCz10/danRer10
DCD010160DT: LOG GRCz10/danRer10
DCD010161DT: PDF GRCz10/danRer10
DCD010162DT: LOG GRCz10/danRer10
DCD010170DT: BEDGRAPH GRCz10/danRer10
DCD010215DT: BAM GRCz10/danRer10
DCD012978DT: LOG GRCz11/danRer11
DCD012979DT: TSV GRCz11/danRer11
DCD012980DT: TSV GRCz11/danRer11
DCD012982DT: BEDGRAPH GRCz11/danRer11
DCD012983DT: BEDGRAPH GRCz11/danRer11
DCD012984DT: PDF GRCz11/danRer11
DCD012985DT: LOG GRCz11/danRer11
DCD012986DT: PDF GRCz11/danRer11
DCD012987DT: BIGWIG GRCz11/danRer11
DCD012988DT: LOG GRCz11/danRer11
DCD013015DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007053BS DCD000384SR tissue Pandey Lab, Johns Hopkins University School of Medicine SAT 90 Days-2 Years adult
Applied Assay ID Biosample Replicate Assay
DCD002051AA DCD013642BR RNA-seq_Pandey_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002421SQ DCD002433TR Pandey Lab, Johns Hopkins University School of Medicine Illumina HiScanSQ 07/22/2015
DCD007977DT: FASTQ
DCD008749DT: BIGWIG GRCz10/danRer10
DCD010211DT: LOG GRCz10/danRer10
DCD010212DT: TSV GRCz10/danRer10
DCD010213DT: TSV GRCz10/danRer10
DCD010216DT: BEDGRAPH GRCz10/danRer10
DCD010217DT: BEDGRAPH GRCz10/danRer10
DCD010218DT: PDF GRCz10/danRer10
DCD010219DT: LOG GRCz10/danRer10
DCD010220DT: PDF GRCz10/danRer10
DCD010221DT: LOG GRCz10/danRer10
DCD010223DT: BEDGRAPH GRCz10/danRer10
DCD010227DT: BEDGRAPH GRCz10/danRer10
DCD010276DT: BAM GRCz10/danRer10
DCD012989DT: LOG GRCz11/danRer11
DCD012990DT: TSV GRCz11/danRer11
DCD012991DT: TSV GRCz11/danRer11
DCD012993DT: BEDGRAPH GRCz11/danRer11
DCD012994DT: BIGWIG GRCz11/danRer11
DCD012995DT: PDF GRCz11/danRer11
DCD012996DT: LOG GRCz11/danRer11
DCD012997DT: PDF GRCz11/danRer11
DCD012998DT: LOG GRCz11/danRer11
DCD012999DT: BEDGRAPH GRCz11/danRer11
DCD013033DT: BAM GRCz11/danRer11